|zinc finger and BTB domain containing 24||OKDB#: 3883|
|Synonyms:||BIF1, PATZ2, ZNF450,||Locus:||6q21 in Homo sapiens|
For retrieval of Nucleotide and Amino Acid sequences please go to:
Mammalian Reproductive Genetics Endometrium Database Resource Orthologous Genes UCSC Genome Browser GEO Profiles new! Amazonia (transcriptome data) new!
R-L INTERACTIONS MGI
SHOW DATA ...
link to BioGPS
|General function||DNA binding, Transcription factor|
|Expression regulated by|
|Comment||Allegro: Analyzing expression and sequence in concert to discover regulatory programs. Halperin Y et al. A major goal of system biology is the characterization of transcription factors and microRNAs (miRNAs) and the transcriptional programs they regulate. We present Allegro, a method for de-novo discovery of cis-regulatory transcriptional programs through joint analysis of genome-wide expression data and promoter or 3' UTR sequences. The algorithm uses a novel log-likelihood-based, non-parametric model to describe the expression pattern shared by a group of co-regulated genes. We show that Allegro is more accurate and sensitive than existing techniques, and can simultaneously analyze multiple expression datasets with more than 100 conditions. We apply Allegro on datasets from several species and report on the transcriptional modules it uncovers. Our analysis reveals a novel motif over-represented in the promoters of genes highly expressed in murine oocytes. The present gene id highly expressed in the oocyte and has a unique promoter motif.|
|Genomic Region||show genomic region|
|Phenotypes and GWAS||show phenotypes and GWAS|
|created:||Jan. 25, 2009, 11:28 a.m.||by:||
|last update:||Jan. 25, 2009, 11:28 a.m.||by:||hsueh email:|
Click here to return to gene search form